Associate Director, Cheminformatics

Takeda Pharmaceutical (US)
Boston, MA
By clicking the “Apply” button, I understand that my employment application process with Takeda will commence and that the information I provide in my application will be processed in line with Takeda’s Privacy Notice and Terms of Use . I further attest that all information I submit in my employment application is true to the best of my knowledge.

Job Description

Research Associate Director, Cheminformatics

J ob Description

At Takeda, we are a forward-looking, world-class R&D organization that unlocks innovation and delivers transformative therapies to patients. By focusing R&D efforts on three therapeutic areas and other targeted investments, we push the boundaries of what is possible to bring life-changing therapies to patients worldwide.

Objective / Purpose:

We are seeking a highly skilled and visionary leade r to establish Takeda’s cheminformatics platform in the era of AI/ML-driven drug discovery. This role will be key to fostering a “prediction-first” culture, integrating cheminformatics, computational chemistry, and machine learning to accelerate drug design. The candidate will collaborate closely with global teams in medicinal chemistry, DMPK, and AI/ML, defining a roadmap for computational tools that empower medicinal chemists to drive innovation.

Accountabilities:

  • Design , automate and deploy cheminformatics workflows and visualization dashboard s to support drug discovery projects.

  • Identify opportunities throughout the DMTA cycle where predictive tools can drive acceleration . B uild predictive models for molecule design and optimization. Extract medchem design knowledge from large-scale chemical and biological datasets.

  • Stay updated with emerging trends in computational chemistry and machine learning as applied to drug discovery. Implement and execute innovative computational methodologies and tools such as AI-based drug discovery, generative chemistry , synthesizable chemical space exploration, DNA Encoded Library (DEL) data analysis and DEL/ML application.

  • Mentor junior scientist s and ML engineers for their career success. S trateg ize and plan for building a n industry-leading cheminformatics group at Takeda .

  • Serve as a trusted thought partner, helping to drive ideation and execution of innovative chemistry strategies that meet Takeda’s therapeutic goals

Education & Competencies (Technical and Behavioral):

The ideal candidate will have demonstrated experience impacting drug discovery exemplified by delivering end-to-end cheminformatics solutions , AI/ML-driven approaches, and generative chemistry.

  • PhD in Computational Chemistry, Cheminformatics , Computer Science or related disciplines, with 6 + years of experience in pharmaceutical or biotech setting .

  • Strong expertise in cheminformatics toolkits such as RDKit and proficiency in programming languages (Python, R) and dashboard technologies.

  • Solid programming and scripting capabilities (e.g., Python, R, C/C++) with a proven ability to design and automate scalable computational workflows.

  • Comprehensive knowledge of the DMTA cycle with demonstrated success in deploying predictive tools across the design process.

  • Experience with DEL data analysis and Multi-task DL method is a strong plus .

  • Experience managing contractors or direct reports. Experience leading strategic initiatives to accelerate DMTA cycle.

Takeda Compensation and Benefits Summary

We understand compensation is an important factor as you consider the next step in your career. We are committed to equitable pay for all employees, and we strive to be more transparent with our pay practices.

For Location:
Boston, MA

U.S. Base Salary Range:
$153,600.00 - $241,340.00

The estimated salary range reflects an anticipated range for this position. The actual base salary offered may depend on a variety of factors, including the qualifications of the individual applicant for the position, years of relevant experience, specific and unique skills, level of education attained , certifications or other professional licenses held, and the location in which the applicant lives and/or from which they will be performing the job. The actual base salary offered will be in accordance with state or local minimum wage requirements for the job location.

U.S. based e mployee s may be eligible for s hort - t erm and/ or l ong- t erm incentive s . U.S. based employees may be eligible to participate in medical, dental, vision insurance, a 401(k) plan and company match, short-term and long-term disability coverage, basic life insurance, a tuition reimbursement program, paid volunteer time off, company holidays, and well-being benefits, among others. U.S. based employees are also eligible to receive, per calendar year, up to 80 hours of sick time, and new hires are eligible to accrue up to 120 hours of paid vacation.

EEO Statement

Takeda is proud in its commitment to creating a diverse workforce and providing equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, gender expression, parental status, national origin, age, disability, citizenship status, genetic information or characteristics, marital status, status as a Vietnam era veteran, special disabled veteran, or other protected veteran in accordance with applicable federal, state and local laws, and any other characteristic protected by law.

Locations

Boston, MA

Worker Type

Employee

Worker Sub-Type

Regular

Time Type

Full time

Job Exempt
Yes

It is unlawful in Massachusetts to require or administer a lie detector test as a condition of employment or continued employment. An employer who violates this law shall be subject to criminal penalties and civil liability.
Posted 2025-11-24

Recommended Jobs

Staff Reporter

Hampshire County, MA

Reporter Wanted-Join Our Award-Winning Team The Hampshire Review, an award-winning weekly newspaper in West Virginia, is seeking a motivated and community-minded reporter to join our newsroom. The id…

View Details
Posted 2025-10-31

Director of Banquets & Convention Services

Hyatt
Cambridge, MA

**Description:** At Hyatt, we believe our guests select Hyatt because of our caring and attentive associates who are focused on providing authentic hospitality and meaningful experiences to each and e…

View Details
Posted 2025-11-13

Join the Pulse of Emergency Care in Historic Salem!

NurseRecruiter
Salem, MA

Registered Nurse - Emergency Room - Travel - (ER RN) Embark on an exciting travel nursing adventure in historic Salem, Massachusetts! Join our compassionate emergency room team, where your skills wil…

View Details
Posted 2025-08-21

Optician

Market Square Optical
Newburyport, MA

About Us: Market Square Optical is a premier luxury Eyewear boutique located in the heart of historic Newburyport. For over three decades, we have built a reputation for curating exceptional eyewa…

View Details
Posted 2025-09-17

FOOD SERVICE UTILITY (FULL TIME AND PART TIME)

Compass Group
Natick, MA

We are hiring immediately for a full time and part time  FOOD SERVICE UTILITY position. Location: Walnut Hill School - 12 Highland Street, Natick, MA 01760. Note: online applications accepted o…

View Details
Posted 2025-10-15

Controls and Design Engineer

Dana-Farber Cancer Institute
Boston, MA

Overview The Controls & Design Engineer plays a critical role within Dana-Farber Cancer Institute’s FMRE division, providing hands-on expertise in control and design engineering to support relia…

View Details
Posted 2025-11-27

SAP Commerce Cloud Senior Application Consultant

NTT America, Inc.
Boston, MA

Unleash Your Potential:  Whether 2 Years or 20, Discover Rewarding Journeys with Us! The  SAP Commerce Cloud Senior Application Consultant is responsible for working with clients and projec…

View Details
Posted 2025-11-12

Registered Nurse (RN) or Licensed Practical Nurse (LPN)

Nursing On Demand
Clinton, MA

We are currently looking for an RN or LPN to join us. This would be based with one of our clients at their assisted living in Clinton, MA. You would be responsible for assessments, oversight of other…

View Details
Posted 2025-09-18

Sr Test Engineer

Jamie Grayem
New Bedford, MA

Sr Test Engineer Bedford, MA, US (Onsite) Clearance: Active TS/SCI clearance required Are you a highly experienced Test Engineer passionate about ensuring the quality and performance of next-…

View Details
Posted 2025-09-17

Director, Technical Program Management (AI/ML Products)

Capital One
Cambridge, MA

Director, Technical Program Management (AI/ML Products) Are you interested in leading programs that deliver on critical business goals and build large scale products & platforms? Abou…

View Details
Posted 2025-09-24