Associate Director, Data Science

Rhythm Pharmaceuticals
Boston, MA
Company Overview
Rhythm is a global, commercial-stage biopharmaceutical company committed to transforming the lives of patients living with rare neuroendocrine diseases. We develop medicines for previously untreatable or undertreated diseases. We recognize the courage it takes for patients and their caregivers to begin their journey of advocacy to find the answers they need. Their courage inspires us to challenge convention, ask bold questions and seek answers for them. Every day, we strive for excellence through our willingness to adapt, learn, and our tenacity to overcome barriers, together.

Opportunity Overview
We are seeking a highly motivated Associate Director of Data Science within Rhythm's Research group and the Data Sciences Team in support of our clinical, regulatory, and scientific objectives in the rare neuroendocrine/obesity/metabolic disease. The successful candidate will have a strong background in biostatistics, genetics, and data analytics, and will be responsible for implementing advanced AI data models, predictive tools, and integrative analyses across the obesity and metabolic disease therapeutic areas. A core focus of this position will be the development and implementation of algorithmic phenotyping approaches using electronic medical records (EMR) and real-world datasets, enabling robust patient stratification, cohort definition, and integration with genomics and biomarker data. This position is ideal for a technically strong investigator who thrives in a fast-paced environment and is motivated to apply and scale high-impact data science infrastructure alongside a growing team.

Responsibilities and Duties
  • Design and deploy AI-driven, agent-based phenotyping pipelines that leverage EMR/EHR and real-world data to define disease cohorts, endpoints, and longitudinal outcomes.
  • Develop scalable approaches for cohort identification, feature extraction, and phenotype validation, including rule-based and machine learning methods.
  • Maintain high-throughput rare variant curation and classification models.
  • Execute the design, development, and deployment of data analysis pipelines, statistical models, and predictive tools to support Genetics-led programs.
  • Lead hands-on integration of clinical, EMR, genomics, and biomarker datasets, enabling multi-modal analyses.
  • Build and maintain reproducible workflows for data ingestion, harmonization (e.g., coding systems, ontologies), QC, and analysis (SQL, Python, R).
  • Apply statistical genetics and advanced analytics to link phenotypic definitions with genetic signals, including rare variant analyses.
  • Drive improvements in data infrastructure and phenotyping frameworks to support team expansion and increased dataset complexity.
Qualifications and Skills
  • Ph.D. in Biostatistics, Computational Biology, Genetics, Data Science, or related quantitative field.
  • ~5+ years of relevant experience in biotechnology, pharmaceuticals, or healthcare analytics.
  • Experience with neuroendocrine, obesity/metabolic-related biology and datasets.
  • Experience applying machine learning and AI models to real-world and clinical datasets, including model development, evaluation, and deployment in production or near-production settings.
  • Experience developing or utilizing AI-driven agents/workflows to automate data extraction, phenotyping, analysis, or knowledge generation tasks.
  • Strong hands-on expertise in SQL, Python, and R, with experience building production-quality data pipelines.
  • Experience with cloud computing and storage environments including AWS, GCP, Snowflake.
  • Demonstrated experience with variant calling pipelines, variant interpretation and ACMG rare variant classification.
  • Demonstrated experience in EMR/EHR and real-world data analysis (e.g., UK Biobank, All of Us) including cohort building and longitudinal data modeling.
  • Proven track record in algorithmic phenotyping, including use of coding systems (ICD, CPT, SNOMED), clinical ontologies, and feature engineering.
  • Familiarity with broader bioinformatics/multi-omics methodologies including RNA-seq, methylation analysis, long-read sequencing would be advantageous.
  • Strong problem-solving skills and ability to operate independently in a fast-paced, execution-focused environment.
  • Excellent communication skills with the ability to clearly present complex analytical outputs to technical stakeholders.
This role can be remote or based out of our corporate office in Boston, Massachusetts. Rhythm operates in a hybrid-work model. Candidates applying must be willing and able to be in the Boston office in coordination with their department and business needs. This role may involve some travel.

More about Rhythm
We are a dynamic and growing global team spanning more than a dozen countries. At Rhythm we are dedicated to transforming the lives of patients living with rare neuroendocrine diseases by rapidly advancing care and precision medicines that address the root cause. Our team is passionate about expanding access to reach more patients and developing novel therapies for other rare neuroendocrine diseases, including congenital hyperinsulinism.

At Rhythm our core values are:
  • We are committed to advancing scientific understanding to improve patients’ lives
  • We are inspired to tackle tough challenges and have the courage to ask bold questions
  • We are eager to learn and adapt
  • We believe collaboration and ownership are foundational for our success
  • We value the unique contribution each individual brings to furthering our mission
Inherent in our core values is the commitment to act ethically and with integrity in all we do.

Rhythm is an equal employment opportunity employer and does not discriminate against any applicant because of race, creed, color, age, national origin, ancestry, religion, gender, sexual orientation, disability, genetic information, veteran status, military status, application for military service, or any other class protected by state or federal law.

Headquartered in Boston, Rhythm is proud to have been named one of the Top Places to Work in Massachusetts.

Posted 2026-07-30

Recommended Jobs

Clinical Study Coordinator/Manager

Propedix, Inc.
Milford, MA

Job Description Job Description Job Description – Clinical Study Manager/Coordinator About the Company: Propedix is a biopharma and consumer health company dedicated to advancing innovative …

View Details
Posted 2026-07-15

Medical Director

Gallin Associates
Boston, MA

Medical Doctor Boston, Massachusetts, United States (On-site) Regional Medical Director – Geriatric Care Facilities We are seeking an experienced  Regional Medical Director to provide clinical…

View Details
Posted 2026-07-30

Bindery Specialist

JLS Mailing Services
Brockton, MA

Job Description Job Description JLS Mailing Services, Inc. Job Description Job Title: Bindery Specialist Work Location: 672 Crescent St. Brockton, MA 02302 Division/Department: Mailing S…

View Details
Posted 2026-07-11

General Labor Abatement Field Technician

Superior Environmental Services
Woburn, MA

Job Description Job Description Salary: Competitive Pay - Based on experience Superior Environmental Services is a full-service open shop specialty service contractor providing Asbestos Abatem…

View Details
Posted 2026-06-25

Nurse Practitioner-Urgent Care-2

South Shore Health
Weymouth, MA

Job Description Summary Under the general guidance of the Hospitalist Director the Nurse Practitioner will evaluate, diagnose and treat patients following written guidelines approved by the Depart…

View Details
Posted 2026-07-30

Field Service Technician, Night Shift - Canton, MA

Rivian
Massachusetts

About Rivian Rivian is on a mission to keep the world adventurous forever. This goes for the emissions-free Electric Adventure Vehicles we build, and the curious, courageous souls we seek to att…

View Details
Posted 2026-07-10

Restaurant Operations Manager

First Watch Restaurants, Inc.
Boston, MA

Overview Our YOU FIRST Philosophy In addition to no night shifts and our fully chef-curated menu, our #1 priority has always been our people. We care about our customers, and we care about …

View Details
Posted 2026-07-22

Director of Social Services

RegalCare at Harwich
Harwich, MA

Job Description Job Description Join Our Compassionate Team at Regal Care at Harwich                                                                                Director of Social Services …

View Details
Posted 2026-07-30

Medical Receptionist/Medical Assistant

Greater Lowell Psychiatric Associates, LLC
North Chelmsford, MA

Job Description Job Description Full-time medical receptionist/medical assistant needed for busy multi-provider outpatient mental health office. Seeking an energetic, service-oriented individua…

View Details
Posted 2026-07-16

Administrative Manager for Residential Services

LUK Inc.
Fitchburg, MA

Job Description Job Description The Administrative Manager for Residential Services collaborates closely with the Director and Assistant Directors of Residential Services to manage the administ…

View Details
Posted 2026-07-16